PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KHN33800.1

Organism

Glycine soja

Taxonomic ID

3848

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Nin-like

Protein Properties

Length: 874aa MW: 97366.6 Da PI: 6.3235

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KHN33800.1	genome	TCUHK	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.3	3.6e-29	558	609	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+i+l++l++yF++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++ KHN33800.1 558 AEKTITLQVLRQYFAGSLKDAAKNIGVCTTTLKRICRQHGIKRWPSRKIKKV 609 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.803	548	629	IPR003035	RWP-RK domain
Pfam	PF02042	6.1E-25	561	609	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	2.1E-22	780	860	No hit	No description
PROSITE profile	PS51745	27.102	780	863	IPR000270	PB1 domain
SMART	SM00666	2.8E-25	780	863	IPR000270	PB1 domain
SuperFamily	SSF54277	1.03E-23	780	865	No hit	No description
Pfam	PF00564	8.3E-19	781	862	IPR000270	PB1 domain
CDD	cd06407	5.37E-43	781	862	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 874 aa Download sequence Send to blast
MGEFFLDGCW LEASADVSDF LLQSPSFSNP LFDPSLSWPA LETNHNKSQD AAFGTQQESH 60 NNIVSVVAGG GYSQQFQSET HSVEGVSEGV RRWWFAPSPI PSPGPGPSIM EKLIRALMWI 120 KDYNRNKDML IQIWVPIHKE GRPILAADDL LFSLESKSLN LAKYREISVT YEFSAEESDS 180 KELARGLPGR VFRYKVPEWT PDVRFFRSDE YPRVDHAQEY DVRGTVAVPI FEQGSKTCLG 240 VIEVVMTTQQ INYGPELESV CKALEAVDLR SSKQLSIQNV KACNRTYEAA LPEIYEVLRS 300 ACEMHRLPLA QTWVPCVQQG KEGCRHSEDN YLLCISPVEH ACYVGDPSIR SFHEACTEHH 360 LLKGEGVAGG AFMTNQPCFS DDITSLSKKD YPLSHYARLF GLHAAVAIRL RSIYNSTDDF 420 VLEFFLPVDC NDSEEQRKML TALSIIIQRV CRSLRVIRDK ELEEANLSVD EVIALADSGF 480 ARNAIFSEPQ YKGMVASLDA EEKSSETMGR KFSDLRQQQE SPILKGNLDC VKECSTSVEG 540 NLSSLGTNKT GERRRAKAEK TITLQVLRQY FAGSLKDAAK NIGVCTTTLK RICRQHGIKR 600 WPSRKIKKVG HSLQKLQLVI NSVQGASGAF QIGSFYSNFP DLASPNLSGT GFFSTLNQSD 660 YPNSTSTQPD HGSLSPEGAS KSPSSSCSQS SISSHSCSSM SELQQHRTAN GAGNKVSTTV 720 SEDSAGVVLK RISSEAELKS LSQDRAKLLP RSQSQETLGE HPKTQYQQPL LKTSSSKVDS 780 HRVKVAYGDE KTRFRMPKSW GYEDLLQEIA RRFNVSDMSK FDVKYLDDDC EWVLLTCDAD 840 LEECIDVCQS SESGTIKLSL QPSSHSMRSS LEFR

Sequence ? help Back to Top

Protein Sequence Length: 874 aa Download sequence Send to blast

MGEFFLDGCW LEASADVSDF LLQSPSFSNP LFDPSLSWPA LETNHNKSQD AAFGTQQESH  60
NNIVSVVAGG GYSQQFQSET HSVEGVSEGV RRWWFAPSPI PSPGPGPSIM EKLIRALMWI  120
KDYNRNKDML IQIWVPIHKE GRPILAADDL LFSLESKSLN LAKYREISVT YEFSAEESDS  180
KELARGLPGR VFRYKVPEWT PDVRFFRSDE YPRVDHAQEY DVRGTVAVPI FEQGSKTCLG  240
VIEVVMTTQQ INYGPELESV CKALEAVDLR SSKQLSIQNV KACNRTYEAA LPEIYEVLRS  300
ACEMHRLPLA QTWVPCVQQG KEGCRHSEDN YLLCISPVEH ACYVGDPSIR SFHEACTEHH  360
LLKGEGVAGG AFMTNQPCFS DDITSLSKKD YPLSHYARLF GLHAAVAIRL RSIYNSTDDF  420
VLEFFLPVDC NDSEEQRKML TALSIIIQRV CRSLRVIRDK ELEEANLSVD EVIALADSGF  480
ARNAIFSEPQ YKGMVASLDA EEKSSETMGR KFSDLRQQQE SPILKGNLDC VKECSTSVEG  540
NLSSLGTNKT GERRRAKAEK TITLQVLRQY FAGSLKDAAK NIGVCTTTLK RICRQHGIKR  600
WPSRKIKKVG HSLQKLQLVI NSVQGASGAF QIGSFYSNFP DLASPNLSGT GFFSTLNQSD  660
YPNSTSTQPD HGSLSPEGAS KSPSSSCSQS SISSHSCSSM SELQQHRTAN GAGNKVSTTV  720
SEDSAGVVLK RISSEAELKS LSQDRAKLLP RSQSQETLGE HPKTQYQQPL LKTSSSKVDS  780
HRVKVAYGDE KTRFRMPKSW GYEDLLQEIA RRFNVSDMSK FDVKYLDDDC EWVLLTCDAD  840
LEECIDVCQS SESGTIKLSL QPSSHSMRSS LEFR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC235387	0.0	AC235387.1 Glycine max strain Williams 82 clone GM_WBb0115J10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014629895.1	0.0	PREDICTED: protein NLP4-like isoform X2
Swissprot	Q9LE38	0.0	NLP4_ARATH; Protein NLP4
TrEMBL	K7KHM8	0.0	K7KHM8_SOYBN; Uncharacterized protein
STRING	GLYMA04G01910.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1237	33	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20640.2	0.0	Nin-like family protein